## Universitätspublikationen

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- Covalently bound substrate at the regulatory site triggers allosteric enzyme activation (2008)
- The mechanism by which the enzyme pyruvate decarboxylase from yeast is activated allosterically has been elucidated. A total of seven three-dimensional structures of the enzyme, of enzyme variants or of enzyme complexes from two yeast species (three of them reported here for the first time) provide detailed atomic resolution snapshots along the activation coordinate. The prime event is the covalent binding of the substrate pyruvate to the side chain of cysteine 221, thus forming a thiohemiketal. This reaction causes the shift of a neighbouring amino acid, which eventually leads to the rigidification of two otherwise flexible loops, where one of the loops provides two histidine residues necessary to complete the enzymatically competent active site architecture. The structural data are complemented and supported by kinetic investigations and binding studies and provide a consistent picture of the structural changes, which occur upon enzyme activation.

- Handwriting analysis for diagnosis and prognosis of Parkinson’s disease (2006)
- At present, there are no quantitative, objective methods for diagnosing the Parkinson disease. Existing methods of quantitative analysis by myograms suffer by inaccuracy and patient strain; electronic tablet analysis is limited to the visible drawing, not including the writing forces and hand movements. In our paper we show how handwriting analysis can be obtained by a new electronic pen and new features of the recorded signals. This gives good results for diagnostics. Keywords: Parkinson diagnosis, electronic pen, automatic handwriting analysis

- Gravitational radiation from elastic particle scattering in models with extra dimensions (2005)
- In this paper we derive a formula for the energy loss due to elastic N to N particle scattering in models with extra dimensions that are compactified on a radius R. In contrast to a previous derivation we also calculate additional terms that are suppressed by factors of frequency over compactification radius. In the limit of a large compactification radius R those terms vanish and the standard result for the non compactified case is recovered.

- Baryon kinetic energy loss in the color flux tube model (2007)
- This article generalizes Schwinger’s mechanism for particles production in the arbitrary finite field volume. McLerran-Venugopolan(MV) model and iterative solution of DGLAP equation in the double leading log approximation for small x gluon distribution function were used to derive the new formula for initial chromofield energy density. This initial chromofield energy is distributed among color neutral clusters or strings of different length. This strings are stretched by receding nucleus. From the proposed mechanism of string fragmentation or color field decay based on exact solution of Dirac equation in the different finite volume, the new formulae for esimated baryon kinetic energy loss and rapidity spectrum of produced partons were derived.

- BBGKY hierarchy in scalar QFT (2001)
- This work is dedicated to obtaining of analog of Bogoliubov's chain for the case of complex scalar field in QFT and renormalization problem of obtained equations is discussed.

- The performance of approximating ordinary differential equations by neural nets (2008)
- The dynamics of many systems are described by ordinary differential equations (ODE). Solving ODEs with standard methods (i.e. numerical integration) needs a high amount of computing time but only a small amount of storage memory. For some applications, e.g. short time weather forecast or real time robot control, long computation times are prohibitive. Is there a method which uses less computing time (but has drawbacks in other aspects, e.g. memory), so that the computation of ODEs gets faster? We will try to discuss this question for the assumption that the alternative computation method is a neural network which was trained on ODE dynamics and compare both methods using the same approximation error. This comparison is done with two different errors. First, we use the standard error that measures the difference between the approximation and the solution of the ODE which is hard to characterize. But in many cases, as for physics engines used in computer games, the shape of the approximation curve is important and not the exact values of the approximation. Therefore, we introduce a subjective error based on the Total Least Square Error (TLSE) which gives more consistent results. For the final performance comparison, we calculate the optimal resource usage for the neural network and evaluate it depending on the resolution of the interpolation points and the inter-point distance. Our conclusion gives a method to evaluate where neural nets are advantageous over numerical ODE integration and where this is not the case. Index Terms—ODE, neural nets, Euler method, approximation complexity, storage optimization.

- Phase diagram of neutral quark matter at moderate densities (2006)
- We discuss the phase diagram of moderately dense, locally neutral three-flavor quark matter using the framework of an effective model of quantum chromodynamics with a local interaction. The phase diagrams in the plane of temperature and quark chemical potential as well as in the plane of temperature and lepton-number chemical potential are discussed.

- The phase diagram of neutral quark matter : the effect of neutrino trapping (2006)
- We study the effect of neutrino trapping on the phase diagram of dense, locally neutral three-flavor quark matter within the framework of a Nambu--Jona-Lasinio model. In the analysis, dynamically generated quark masses are taken into account self-consistently. The phase diagrams in the plane of temperature and quark chemical potential, as well as in the plane of temperature and lepton-number chemical potential are presented. We show that neutrino trapping favors two-flavor color superconductivity and disfavors the color-flavor-locked phase at intermediate densities of matter. At the same time, the location of the critical line separating the two-flavor color-superconducting phase and the normal phase of quark matter is little affected by the presence of neutrinos. The implications of these results for the evolution of protoneutron stars are briefly discussed. PACS numbers: 12.39.-x 12.38.Aw 26.60.+c

- The outer crust of non-accreting cold neutron stars (2006)
- The properties of the outer crust of non-accreting cold neutron stars are studied by using modern nuclear data and theoretical mass tables updating in particular the classic work of Baym, Pethick and Sutherland. Experimental data from the atomic mass table from Audi, Wapstra, and Thibault of 2003 is used and a thorough comparison of many modern theoretical nuclear models, relativistic and non-relativistic ones, is performed for the first time. In addition, the influences of pairing and deformation are investigated. State-of-the-art theoretical nuclear mass tables are compared in order to check their differences concerning the neutron dripline, magic neutron numbers, the equation of state, and the sequence of neutron-rich nuclei up to the dripline in the outer crust of non-accreting cold neutron stars.

- The phase diagram of neutral quark matter : self-consistent treatment of quark masses (2005)
- We study the phase diagram of dense, locally neutral three-flavor quark matter within the framework of the Nambu--Jona-Lasinio model. In the analysis, dynamically generated quark masses are taken into account self-consistently. The phase diagram in the plane of temperature and quark chemical potential is presented. The results for two qualitatively different regimes, intermediate and strong diquark coupling strength, are presented. It is shown that the role of gapless phases diminishes with increasing diquark coupling strength.